PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT18249
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family NAC
Protein Properties Length: 168aa    MW: 19373.5 Da    PI: 10.5712
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT18249genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.91.2e-336714353128
       NAM  53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd+ev s  ++++vg++ktLvfy+grap+g+kt+Wvmhe+rl
  EMT18249  67 LTASEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDREVRSPaTRAVVGMRKTLVFYQGRAPNGSKTSWVMHEFRL 143
               3567**************************************977788***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100531.845168IPR003441NAC domain
PfamPF023658.0E-1759143IPR003441NAC domain
SuperFamilySSF1019411.19E-3364148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MSRSRLLFFR LCSLDRCMLA AVLGKEFLLV VASLRVSRHP CFVLRVIDEF SLTLLIMLWA  60
SEDVAKLTAS EWYFFSFRDR KYATGSRTNR ATKTGYWKAT GKDREVRSPA TRAVVGMRKT  120
LVFYQGRAPN GSKTSWVMHE FRLDSPHLPP RGFLYYALTD DESKGFPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B3e-282614628145NAC domain-containing protein 19
4dul_A3e-282614628145NAC domain-containing protein 19
1ut7_B3e-282614628145NO APICAL MERISTEM PROTEIN
1ut7_A3e-282614628145NO APICAL MERISTEM PROTEIN
1ut4_B3e-282614628145NO APICAL MERISTEM PROTEIN
1ut4_A3e-282614628145NO APICAL MERISTEM PROTEIN
3swp_D4e-282614631148NAC domain-containing protein 19
3swp_C4e-282614631148NAC domain-containing protein 19
3swp_B4e-282614631148NAC domain-containing protein 19
3swp_A4e-282614631148NAC domain-containing protein 19
3swm_D4e-282614631148NAC domain-containing protein 19
3swm_C4e-282614631148NAC domain-containing protein 19
3swm_B4e-282614631148NAC domain-containing protein 19
3swm_A4e-282614631148NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2484801e-129AK248480.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf7e16, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580130.12e-57PREDICTED: protein CUP-SHAPED COTYLEDON 1-like
SwissprotO040174e-37NAC98_ARATH; Protein CUP-SHAPED COTYLEDON 2
TrEMBLR7WET01e-122R7WET0_AEGTA; Protein CUP-SHAPED COTYLEDON 2
STRINGMLOC_12466.21e-57(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2506755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.11e-47NAC domain containing protein 74